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ISOLATE II Plant DNA Kit

ISOLATE II Plant DNA Kit provides a simple, efficient column-based method for the isolation of genomic DNA from a wide variety of plant materials, without the

ISOLATE II Plant DNA Kit

Fast – streamlined protocol for reliable recovery of genomic DNA in as little as 30 minutes

High-performance – extraction of high-quality DNA, ideal for use in all downstream applications

Efficient – optimized lysis conditions and column matrix for improved recovery of genomic DNA from a wide range of plant samples

Versatile – a choice of two lysis buffers ensures excellent genomic DNA recovery from any plant material

Convenient – kit includes all necessary components, including filters (shredders) and RNase A

Safe - no hazardous phenol/chloroform extraction

Excellent recovery of plant DNA using different homogenization techniques

20 mg freeze-dried budding leaves of A. thaliana were homogenized in a mortar and pestle (lanes 1-3) and with a rotor stator homogenizer (lanes 4-6). Genomic DNA was isolated using ISOLATE II Plant DNA Kit and a 1.4 kb fragment of AOS gene was amplified from the isolated DNA. The results illustrating that the ISOLATE II Plant DNA Kit gives consistent results with different extraction techniques.

High yields of plant genomic DNA

Genomic DNA was isolated from 20 mg freeze-dried budding leaves of A. thaliana using ISOLATE II Plant DNA Kit and a 2-fold serial dilution of the isolated DNA (200 ng to 6.25 ng, lanes 1-6 respectively) was used to amplify a 1.4 kb fragment of AOS gene. The results illustrating that the ISOLATE II Plant DNA Kit gives high yields of high quality DNA, ideal for all downstream applications.

Product Description

By combining the stringency of CTAB lysis with the speed and ease-of-use of silica-membrane purification, ISOLATE II Plant DNA Kit provides a fast method for the purification of high-quality genomic DNA from most plant cells, particularly those rich in polysaccharides, including leaves, bark, roots and fruits as well as dung, animal-fecal, soil and compost samples.

Some plant tissues do not lyse well in CTAB and so an SDS-based lysis buffer is also provided as an alternative. Residual amounts of RNA remaining can be removed using RNase treatment during lysis with the RNase A supplied in the kit.

ISOLATE II Plant DNA Kit shows excellent recovery of plant DNA when different homogenization techniques are used. The silica membrane in the columns is optimized to improve DNA binding to give high-yields of high-quality DNA, even from difficult samples such as freeze-dried budding leaves. The extracted DNA is ready to use for subsequent downstream reactions such as PCR.

ISOLATE II Plant DNA Kit has been designed to deliver optimal performance in qPCR in tandem with SensiFAST Real-Time PCR Kits and in end-point PCR with MyTaq DNA Polymerase.

Applications

  • qPCR
  • End-point PCR
  • Southern, dot and slot blotting
  • Genotyping
  • Restriction digestion
  • Next generation sequencing
  • Bisulfite conversion/methylation analysis

Product Specification

 

Presentation 10 Preps 50 Preps 250 Preps
ISOLATE II Filters 10 50 250
ISOLATE II Plant Column 10 50 250
Collection Tubes (2 mL) 20 100 500
Lysis Buffer PA1 5 mL 25 mL 125 mL
Lysis Buffer PA2 4 mL 20 mL 100 mL
Precipitation Buffer PL3 1 mL 10 mL 25 mL
Binding Buffer PB 6 mL 30 mL 125 mL
Wash Buffer PAW1 6 mL 30 mL 125 mL
Wash Buffer PAW2 6 mL 25 mL 50 mL
Elution Buffer PG 13 mL 13 mL 30 mL
RNase A (lyophilized) 1.5 mg 6 mg 2 x 15 mg
Appearance Colorless
Application qPCR, End-point PCR, Southern, dot and slot blotting, Genotyping, Restriction digestion, Next generation sequencing, Bisulfite conversion/methylation analysis
Sample type Plant cells and tissues or filamentous fungi
Preparation time Approximately 30 minutes for 6 preps
Elution volume 60 µL
Yield Up to 50 µg of DNA
Storage Store lyophilized RNase I at 4°C and reconstituted at -20°C.

All other kit components at room temperature (18-25°C)

Functionality Nucleic acid recovery >90%

Product Ordering

Cat. No.              Size

BIO-52068          10 preps

BIO-52069          50 preps

BIO-52070          250 preps

Product Support Material

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FAQs:

ISOLATE II Plant DNA Kit

Can I use columns or solutions from one kit in another one?
The columns supplied with the ISOLATE II kits may appear similar, but each type has been optimized to work within the buffer system supplied with the corresponding kit. The swapping of columns (or buffers) between kits may lead to no recovery of nucleic acid whatsoever, or at the very least severely impaired purification.
Is it possible to interrupt the DNA or RNA extraction protocols?
Interruption of the DNA/RNA extraction process is possible after the sample lysis only. It is possible to homogenize and lyse the samples and to store them in the freezer until use for RNA extraction. RNA clean up with a column cannot be interrupted and we recommend to avoid delays during the column purification process. If a delay is unavoidable the columns should be stored on ice.
The sequencing protocol I am using says that I have to have my DNA suspended in pure water. Do I have to use the elution buffer supplied with the kit?
The elution buffer is ideal for applications such as restriction enzyme digestion, sequencing and PCR. It is possible to use DNase-free water for elution, but you should expect a slightly lower yield.
Does the elution buffer of the DNA extraction kits contain EDTA? I am afraid this may impair my downstream applications.
The elution buffer of this kit does not contain EDTA which could interfere with downstream applications like PCR or sequencing.
The lysis buffer of my Plant DNA Kit became cloudy, is it still possible to use it?
Both lysis buffers PA1 and PA2 can possibly become cloudy, if they are stored under 20°C. They contain CTAB (PA1) and SDS (PA2) which can precipitate. After a short incubation at 37°C for several minutes they should become clear again.
What would be the best lysis buffer for my samples for DNA extraction with the ISOLATE II Plant DNA Kit (PA1/PA2)?
The best lysis buffer for distinct samples is not predictable, try both lysis buffer (SDS/CTAB) side by side to determine the optimal buffer for your plant sample.
Which one is the recommended kit or protocol for hard to lyse bacteria (e.g. gram positive bacteria)?
The ISOLATE II Genomic DNA Kit provides a protocol for hard to lyse bacteria (see sec 9.2). Also the ISOLATE II Plant DNA kit could be suitable, because the optimized lysis buffer from this kits may be also be used for processing these difficult to lyse bacteria. In general, it is necessary to optimize the lysis step with the appropriate mechanical, enzymatic or chemical methods recommended for this kind of sample. Please refer to the related literature or ask the Meridian technical support for further suggestion.
Which is the recommended kit for processing of soil samples or hard to lyse bacteria?
It is possible to use the ISOLATE II Plant DNA and RNA kits. The optimized lysis of these kits may be also useful for processing difficult to lyse bacteria and fungi in soil samples
What do I need to consider for the clean-up of large fragments or PCR products?
For the optimal recovery of large RNA/DNA fragments it is necessary to optimize the elution step. To increase the recovery rate it would be helpful to use a larger volume for elution, incubate the column with the elution buffer prior to centrifugation and use repeated elution steps. To avoid excessive dilution it may be helpful to reapply the eluted fraction again. Furthermore it could be helpful for DNA elution to heat the elution buffer to 70°C.

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