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ISOLATE II Plasmid Mini Kit

Highly efficient purification of plasmid DNA by combining fast SDS/alkaline lysis of the starting material with the speed and purity of silica-membrane column purification.

ISOLATE II Plasmid Mini Kit

Fast - streamlined protocol for extraction of eighteen plasmid samples in as little as 15 minutes

Efficient – rapid SDS/alkaline lysis and efficient column-binding for high-yield recovery of all plasmid molecules

High-performance – efficient extraction of high-purity plasmid DNA, ideal for use in all downstream applications

Flexible – reliable recovery of high- and low-copy plasmids from all gram-positive bacteria

Reproducible results

pUC19 plasmid was isolated from 5 mL E. coli overnight LB cultures using the ISOLATE II Plasmid Mini Kit and cut with various restriction enzymes, before analysis on 1% TAE agarose gel. Each restriction digestion (lanes 1-6) was performed in triplicate on plasmids from different overnight cultures. The results illustrate consistency in plasmid recovery.

High plasmid recovery

pUC19 plasmid was isolated from increasing volumes of E. coli from an overnight LB culture (0.05 ml, 0.1 mL, 1 mL, 3 mL and 5 mL culture, lanes 1- 5 respectively), using ISOLATE II Plasmid Mini Kit and run on 1.5% TAE agarose gel. The results illustrate the very high binding capacity of the columns in the ISOLATE II Plasmid Mini Kit.

Excellent performance of isolated plasmid DNA in downstream applications

pET19 plasmid was isolated from 3 mL E. coli overnight LB culture using ISOLATE II Plasmid Mini Kit. Sequencing was carried out based on standard T7 promoter and terminator primers, allowing more than 750 nucleotides to be read.

Product Description

The ISOLATE II Plasmid Mini Kit provides a simple, efficient column-based method for the isolation of plasmid DNA from bacterial cultures, without the need for hazardous reagents such as phenol.

By combining SDS/alkaline lysis with the speed and ease-of-use of silica-membrane purification, the ISOLATE II Plasmid Mini Kit provides a fast method for the purification of high-quality plasmid DNA. Separate protocols are provided for the isolation of high-copy plasmids, the isolation of low-copy plasmid, P1 constructs and cosmid DNA from E. coli and the isolation of plasmids from gram-positive bacteria such as Bacillus, Staphylococcus, Bifidobacteria or Corynebacteria.

The ISOLATE II Plasmid Mini Kit has been designed to deliver optimal performance in cloning, sequencing as well as end-point PCR alongside any enzyme from the Meridian PCR portfolio, including MyTaq DNA Polymerase. Additionally, the ISOLATE II Plasmid Mini Kit can be used in tandem with the SensiFAST Real-Time PCR Kits for high-performance qPCR.

Applications

  • Cloning
  • Sequencing
  • Restriction digestion
  • Labeling
  • End-point PCR
  • qPCR
  • Transfection
  • Fluorescent sequencing
  • In vitro transcription

Product Specification

Presentation 10 Preps 50 Preps 250 Preps
ISOLATE II Plasmid Mini Spin Columns 10 50 250
Collection Tubes (2 mL) 10 50 250
Resuspension Buffer P1 5 mL 15 mL 75mL
Lysis Buffer P2 5 mL 15 mL 100 mL
Neutralization Buffer P3 5mL 20 mL 100 mL
Wash Buffer PW1 6 mL 30 mL 2 x 75 mL
Wash Buffer PW2 6 mL 12 mL 2 x 25 mL
Elution Buffer P 13 mL  13mL 60 mL
RNase A (lyophilized) 2.5 mg 6 mg 30 mg
Appearance Colorless
Application Cloning, Sequencing, Restriction digestion, Labeling, End-point PCR, qPCR, Transfection, Fluorescent sequencing, In vitro transcription
Sample type E. coli and gram-positive bacteria such as Bacillus, Staphylococcus, Bifidobacteria or Corynebacteria.
Preparation time Approximately 25 minutes for 18 preps
Plasmid size < 15 kb
Elution volume 50 µL
Yield Up to 60 µg plasmid DNA
Storage Store Resuspension Buffer P1 containing RNase A at 4°C and all other kit components at room temperature (18-25°C)
Functionality Nucleic acid recovery >90%
RNase A No detectable DNase activity

Product Ordering

Cat. No.              Size

BIO-52055          10 Preps

BIO-52056          50 preps

BIO-52057          250 preps

Product Support Material

View all Documents

ISOLATE II Plasmid Mini Kit: We have been using the plasmid mini kit from Meridian for a f...

A. Gupte, St. Vincent's Institute of Medical Research, Australia

FAQs:

ISOLATE II Plasmid Mini Kit

Can I use columns or solutions from one kit in another one?
The columns supplied with the ISOLATE II kits may appear similar, but each type has been optimized to work within the buffer system supplied with the corresponding kit. The swapping of columns (or buffers) between kits may lead to no recovery of nucleic acid whatsoever, or at the very least severely impaired purification.
Is it possible to interrupt the DNA or RNA extraction protocols?
Interruption of the DNA/RNA extraction process is possible after the sample lysis only. It is possible to homogenize and lyse the samples and to store them in the freezer until use for RNA extraction. RNA clean up with a column cannot be interrupted and we recommend to avoid delays during the column purification process. If a delay is unavoidable the columns should be stored on ice.
The sequencing protocol I am using says that I have to have my DNA suspended in pure water. Do I have to use the elution buffer supplied with the kit?
The elution buffer is ideal for applications such as restriction enzyme digestion, sequencing and PCR. It is possible to use DNase-free water for elution, but you should expect a slightly lower yield.
Does the elution buffer of the DNA extraction kits contain EDTA? I am afraid this may impair my downstream applications.
The elution buffer of this kit does not contain EDTA which could interfere with downstream applications like PCR or sequencing.
My strain of E. coli contains a low-copy plasmid. How can I isolate the plasmid DNA?
The high quality of the columns used in the ISOLATE II kits, including the ISOLATE II Plasmid Mini Kit, allow larger volumes of culture media to be used as starting material. The exact volume to be used depends on the strain and plasmid used in the experiment, but the ISOLATE II Plasmid Mini Kit columns will cope with the biomass from 5 mL of E. coli grown in LB to an OD600 of around 3. When using larger volumes of culture medium, it is important to ensure that as much spent medium as possible is removed from above the biomass pellet after spinning down the culture. If care is taken, up to 15 mL of bacterial culture medium can be used as a starting material, which should give a better yield of low-copy plasmid DNA. However, double the volumes of buffers P1, P2 and P3 should be used compared to the standard protocol.
My plasmid yield from using the ISOLATE II Plasmid Mini Kit is very low, what could be the cause of this?
The most frequent cause of low yield is that the biomass pellet is not resuspended properly prior to lysis. Clumps of bacteria mean that the lysis solution cannot access all the cells and these unlysed cells are then spun down later in the process. Low yield can also be caused by incomplete transfer of the cleared lysate to column, especially when the white precipitate made on the addition of buffer P3 is loose, making it hard to retrieve the maximum amount of lysate. Very high biomass concentrations can also lead to low plasmid yield. This can be because the column becomes overloaded, so the yield per mg biomass is less than expected. However use of rich media such as SOC or TY instead of LB can give high biomass but very low plasmid concentration.
Another lab has sent me a plasmid, but the purity looks low. Can I use your ISOLATE II Plasmid Mini Kit to clean up the plasmid?
The ISOLATE II Plasmid Mini Kit can be used to both purify and concentrate naked plasmid DNA. The DNA can be loaded directly onto a fresh column then the remaining washing, drying and elution steps followed as for the standard protocol. The sample can be concentrated by reducing the elution volume in the final stage. However, a better recovery can be obtained by using the ISOLATE II PCR and Gel Kit and treating the plasmid sample as though it were a PCR product.
What do I need to consider for the clean-up of large fragments or PCR products?
For the optimal recovery of large RNA/DNA fragments it is necessary to optimize the elution step. To increase the recovery rate it would be helpful to use a larger volume for elution, incubate the column with the elution buffer prior to centrifugation and use repeated elution steps. To avoid excessive dilution it may be helpful to reapply the eluted fraction again. Furthermore it could be helpful for DNA elution to heat the elution buffer to 70°C.

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